PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG048300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 374aa    MW: 39637.5 Da    PI: 6.5891
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG048300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.84.6e-28128188259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          dDg++WrKYGqK++ g++fpr+YYrCt++   gCp++k+v+rs++d  v+++tY+geH+++
  Pavir.4KG048300.1.p 128 DDGFSWRKYGQKDILGAKFPRGYYRCTYRaaqGCPATKQVQRSDTDLCVFDVTYQGEHTCH 188
                          8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-28120189IPR003657WRKY domain
PROSITE profilePS5081122.94122185IPR003657WRKY domain
SuperFamilySSF1182901.12E-24126189IPR003657WRKY domain
SMARTSM007746.6E-40127189IPR003657WRKY domain
PfamPF031061.6E-26128188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MQDGAGAEGG IHLLLTILAD GEEQARQLGE LAEDPRSRAE HYRDAAARLQ GTLGKAVAVA  60
RAVEAAPGSS RGTDRSYSPR SADESSGGTA AAEAPPERQS LCNKRRKGLP RWTAKFRVPD  120
ANLEATPDDG FSWRKYGQKD ILGAKFPRGY YRCTYRAAQG CPATKQVQRS DTDLCVFDVT  180
YQGEHTCHQK QRHAAAVTAH GGGGGSQSSP PPHHEQQQDP SMQLVVMGFK DALKVETGAP  240
LHHQDHDYYD HGPASAPAAV PFSFPSVPFH HHGGGEAPDN NPAAAAAFSP PGSSYFSAPP  300
HRCPAVAGSY DVYDYEAGPP GARMGGADSS ELGEVVSRAT GIDYSSLYHH AEVDPHLPFP  360
PFGGPSPSHG PYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-211291861875Disease resistance protein RRS1
5w3x_D3e-211291861875Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG048300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811264.10.0probable WRKY transcription factor 53
TrEMBLA0A2S3HLN70.0A0A2S3HLN7_9POAL; Uncharacterized protein
STRINGPavir.Da02163.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-37WRKY family protein