PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG048400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 276aa    MW: 31932.2 Da    PI: 8.0513
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG048400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.63.7e-2222109289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          f+ +Y+ +vGF+vrk+++++sk +g++t++++vC keg+++ +k++ + +++traetrt+C  ++ +++++  g++evt+l l HnH l
  Pavir.4KG048400.1.p  22 FWINYGGHVGFEVRKRYTNESKYDGKTTSSRYVCAKEGQQALHKRD-HATKKTRAETRTSCPVRMGLQLDRvVGNYEVTDLILVHNHIL 109
                          999****************************************999.99**********************9***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1722109IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSPSWLAHIG QNFGNLDDAW SFWINYGGHV GFEVRKRYTN ESKYDGKTTS SRYVCAKEGQ  60
QALHKRDHAT KKTRAETRTS CPVRMGLQLD RVVGNYEVTD LILVHNHILH LPQTFHLMAS  120
QRKISKVQAF EIEAADDSGI RPKAAHELAS RQVGGPMNLN YTCRDHKNYL QSRRQRELAY  180
GHQAGSMLKY FQHKICENPS FHYALQLDIE EQITNIFWAD AKMIIDYAHF GDVVTFDTTF  240
DTNKEYRPFG VFVGLNQWLH VLENWMEITY MLLQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG048400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310602.11e-137protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A287W7H41e-131A0A287W7H4_HORVV; Uncharacterized protein
STRINGSb02g029930.11e-135(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-32FAR1-related sequence 5