PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG068400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 315aa    MW: 35516.6 Da    PI: 6.871
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG068400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.1e-13141184447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT+ E+ l++++ + +G g+Wk I+r++ ++Rt+ q+ s+ qky
  Pavir.4KG068400.1.p 141 WTKAEHRLFLRGLQVYGRGNWKNISRYFVTTRTPLQVSSHAQKY 184
                          *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.53133189IPR017930Myb domain
SuperFamilySSF466896.6E-16137190IPR009057Homeodomain-like
SMARTSM007177.1E-11137187IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.9E-13140187IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.0E-9140186IPR009057Homeodomain-like
PfamPF002495.9E-10141184IPR001005SANT/Myb domain
CDDcd001678.80E-10141185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDSTMSTGEW SASEINMVKS LIARFNSNIV LGDMSKKHSD IVNEIQTMFP MKEKHQVIHL  60
YVDLMVETMQ SGTGDGSYYS GTTGRDLVNN FEIPLEDSAM NNMGMLLGYP TMETGVRRVA  120
QEVLRRQSTP RMERAHNTRF WTKAEHRLFL RGLQVYGRGN WKNISRYFVT TRTPLQVSSH  180
AQKYFRRLEN PTRRQRYSIN DVGLYDTEPL AQNNTSNWEG FSFAGGAYNP SLYGASGQHA  240
TMNNQAQVQS HILYHANQTS TSNQVAAWAG DQQIGATTSY VAPVMEDGGS QAAWTADQLG  300
DFFHDQMMNN MDIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG068400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966689.11e-159uncharacterized protein LOC101759880
TrEMBLA0A3L6PF691e-164A0A3L6PF69_PANMI; Uncharacterized protein
STRINGPavir.J01189.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-21Homeodomain-like transcriptional regulator