PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG068400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 284aa    MW: 32060.7 Da    PI: 8.6896
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG068400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.8e-13110153447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT+ E+ l++++ + +G g+Wk I+r++ ++Rt+ q+ s+ qky
  Pavir.4KG068400.2.p 110 WTKAEHRLFLRGLQVYGRGNWKNISRYFVTTRTPLQVSSHAQKY 153
                          *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.53102158IPR017930Myb domain
SuperFamilySSF466894.88E-16106159IPR009057Homeodomain-like
SMARTSM007177.1E-11106156IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.3E-13109156IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.7E-10109155IPR009057Homeodomain-like
PfamPF002495.1E-10110153IPR001005SANT/Myb domain
CDDcd001676.56E-10110154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDSTMSTGEW SASEINMVKS LIARFNSNIV LGDMSKKHSD IVNEIQTMFP MKEKHQVIHL  60
YVDLMVETMQ SGTGDGSYYS GTTGVRRVAQ EVLRRQSTPR MERAHNTRFW TKAEHRLFLR  120
GLQVYGRGNW KNISRYFVTT RTPLQVSSHA QKYFRRLENP TRRQRYSIND VGLYDTEPLA  180
QNNTSNWEGF SFAGGAYNPS LYGASGQHAT MNNQAQVQSH ILYHANQTST SNQVAAWAGD  240
QQIGATTSYV APVMEDGGSQ AAWTADQLGD FFHDQMMNNM DIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG068400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966689.11e-139uncharacterized protein LOC101759880
TrEMBLA0A3L6PF691e-140A0A3L6PF69_PANMI; Uncharacterized protein
STRINGPavir.J01189.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-21Homeodomain-like transcriptional regulator