PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG082500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 55aa    MW: 6616.53 Da    PI: 10.9014
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG082500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.92.5e-0610372754
                         HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox 27 aeereeLAkklgLterqVkvWFqNrRak 54
                         ++++++L +++gL+ +q+ +WF N+R +
  Pavir.4KG082500.1.p 10 EDDKAKLVEETGLQLKQINNWFINQRKR 37
                         678899********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.98E-9944IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-13944IPR009057Homeodomain-like
PROSITE profilePS500718.8431041IPR001356Homeobox domain
PfamPF059201.4E-111037IPR008422Homeobox KN domain
CDDcd000862.17E-41042No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
MISFEWLVQE DDKAKLVEET GLQLKQINNW FINQRKRNWH NNSQTSTLKS KRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13453RKRNWHNNSQTSTLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.271313e-61callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}.
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG082500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605143e-57BT060514.2 Zea mays full-length cDNA clone ZM_BFb0009E15 mRNA, complete cds.
GenBankEU9698413e-57EU969841.1 Zea mays clone 336323 homeobox protein HD1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558936.21e-23homeobox protein knotted-1-like 3
RefseqXP_015628919.11e-23homeobox protein knotted-1-like 3
RefseqXP_015689748.16e-24PREDICTED: homeobox protein knotted-1-like 3
RefseqXP_020184577.19e-24homeobox protein knotted-1-like 3
SwissprotQ94LW31e-24KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A453J5V85e-26A0A453J5V8_AEGTS; Uncharacterized protein
STRINGPavir.J13578.1.p3e-31(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.12e-22KNOTTED-like homeobox of Arabidopsis thaliana 7