PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG083200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 227aa MW: 24477.3 Da PI: 3.9524

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG083200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	22.6	3e-07	1	39	58	96
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelal 96 m++++ye++a+ P +G+v +i++lqq+++q++ +l Pavir.4KG083200.1.p 1 MHCIIYESHAWDMYPASGCVPIIHDLQQRIRQAELDLRC 39 789*****************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	4.3E-5	1	38	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MHCIIYESHA WDMYPASGCV PIIHDLQQRI RQAELDLRCV YAGILAYRAA AAQGGVPVPD 60 SDGDPSASAS APPPPFQLQP ATGDDVAAET YGGGGWPFIT MYGGDQQQMV MNAAASDDDN 120 IALQMPPWMM QPPQYDMTTT SAAAVADMAG KLVAQQDHQF LVDATMVSQP EHQQQHTIQP 180 AELDDEMSYF VNDGVDGDSE MPPESSMYSS EKKAMRAPKM ESVNGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG083200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813245.1	1e-115	protein LATERAL ORGAN BOUNDARIES-like
TrEMBL	A0A2S3HLA1	1e-114	A0A2S3HLA1_9POAL; Uncharacterized protein
STRING	Pavir.J35697.1.p	1e-165	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15459	13	16

Link Out ? help Back to Top
Phytozome	Pavir.4KG083200.1.p