PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG086600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 134aa MW: 15625.8 Da PI: 10.4158

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG086600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.8e-22	23	111	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +f+ +Y+ ++GF+vrk++s+ s +g++t+ +fvCs+eg r++ +++ + ++ raetrt+Cka++ + +++ ++ev++++leHnH l Pavir.4KG086600.1.p 23 QFWLAYGGRTGFDVRKRYSNGSPFDGKVTSCRFVCSNEGLRRKGQTN-RATKCFRAETRTDCKARISLILDRvARNYEVNDVVLEHNHLL 111 69***************************************9999.99999***********99999*************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-17	23	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MAELNKETPQ VGLRFKSADE AWQFWLAYGG RTGFDVRKRY SNGSPFDGKV TSCRFVCSNE 60 GLRRKGQTNR ATKCFRAETR TDCKARISLI LDRVARNYEV NDVVLEHNHL LHLPETRHLW 120 HRREKFQNCK LLK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG086600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462668.1	5e-76	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021310602.1	5e-76	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A453IBT6	1e-54	A0A453IBT6_AEGTS; Uncharacterized protein
STRING	Sb02g029930.1	2e-75	(Sorghum bicolor)
STRING	Sb02g042670.1	5e-77	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	4e-13	FAR1-related sequence 12

Link Out ? help Back to Top
Phytozome	Pavir.4KG086600.1.p