PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG106600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 144aa    MW: 16946.4 Da    PI: 10.5012
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG106600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.48.6e-2223110189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          kf+ eY+ ++GF+vrk++++ s+ +g++++ +fvCs+e +r++ +++ + ++  raetrt+Cka++ +  +  +++evt+++leHnH l
  Pavir.4KG106600.1.p  23 KFWVEYGGRTGFDVRKRYTNASSYDGKVISCRFVCSNEDHRRKGQTN-NVRKCFRAETRTDCKARISIVVRGVENYEVTNVVLEHNHFL 110
                          69*****************************************9999.89999**********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1723110IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MAELEKGTPQ VGLRFRNPDE AWKFWVEYGG RTGFDVRKRY TNASSYDGKV ISCRFVCSNE  60
DHRRKGQTNN VRKCFRAETR TDCKARISIV VRGVENYEVT NVVLEHNHFL HLPETRHLMA  120
SQRNERKMMV HNIQRKWRMM VAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG106600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462668.14e-66protein FAR1-RELATED SEQUENCE 5
RefseqXP_021310602.14e-66protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A287W7A62e-56A0A287W7A6_HORVV; Uncharacterized protein
TrEMBLA0A287W7H43e-56A0A287W7H4_HORVV; Uncharacterized protein
STRINGSb02g029930.12e-65(Sorghum bicolor)
STRINGSb02g042670.14e-67(Sorghum bicolor)
STRINGSb04g038323.15e-66(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.15e-13FAR1 family protein