PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG113400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 507aa    MW: 57930.2 Da    PI: 10.0415
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG113400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.71.2e-10139211190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn Y+ e GF vr  + kk+ +++  tk + vCs+e +                 +rt+Cka++++++++d+ w++++++  H+H l+
  Pavir.4KG113400.2.p 139 DFYNLYSWEKGFGVRFGRGKKN-DSKYQTKLDIVCSCERS----------------ASRTDCKAMIRLHRRSDHSWYISRVNDTHSHRLT 211
                          69***************99998.66668999****98743................4689***************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-7139211IPR004330FAR1 DNA binding domain
PfamPF105513.2E-26333426IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDPIQSSLAH ATLRDQQCGR HIASDFISAA GEPTIPWQQG DAQVAVVAVI AQKDPLQLQQ  60
GHRQALDCST RTGTPNNSTC SPTRGPKRRA RREGPDYRIA PAEETAMIKA MRRARTSPGE  120
AIFFPHEGTI FNSRDEARDF YNLYSWEKGF GVRFGRGKKN DSKYQTKLDI VCSCERSASR  180
TDCKAMIRLH RRSDHSWYIS RVNDTHSHRL TEAYGENKHW KSHSYIDPST KDLIKKLREN  240
NISLGRICNI LGATDGGSRS AMRKESVRSI CAKMAQENMR DDIGKTLKLL ETMKGTDPGL  300
EVRFQLDADG RLKSMLWCTG KNRMDYSSFG DAITFDTTYH TNLYSLPFGL FMGINNHFQY  360
IVLGGLLLTS ETTADFEWAF ANFISIMGGK APITMLTDQC AAMAKAMKST MKETRHRWCR  420
WHVLKNAKDR LGKVYSKHKG FKHEFNKLVI DETDITKFEM TWDTLVKKYR LSKNKFLKRL  480
FKYREKMGKT ILHGYLLCRN DKHTEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388RGPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG113400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1B6Q0S60.0A0A1B6Q0S6_SORBI; Uncharacterized protein
STRINGPavir.Ab02590.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-45FAR1-related sequence 5