PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG119400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 83aa MW: 9987.27 Da PI: 7.4061

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG119400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.4	1.3e-09	31	74	1	44
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreee 44 +fYn+Y + GFsvrk+k +++ ++e+++++ vCs eg+r+e+ Pavir.4KG119400.1.p 31 EFYNAYTFHKGFSVRKDKVRYKPSTKEVKWKRVVCSFEGYRSEK 74 6****************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-7	31	75	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MEANGYVCLE EIEEYNYVAN QKFNTEEDFF EFYNAYTFHK GFSVRKDKVR YKPSTKEVKW 60 KRVVCSFEGY RSEKHLFLFP LS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG119400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700767.1	6e-26	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_022680951.1	4e-25	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_022685196.1	5e-25	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2S3ILD2	6e-37	A0A2S3ILD2_9POAL; Uncharacterized protein
STRING	Pavir.Da01536.1.p	1e-50	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Link Out ? help Back to Top
Phytozome	Pavir.4KG119400.1.p