PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG125000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 154aa    MW: 16143.3 Da    PI: 10.7697
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG125000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00114567123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  Cg+ F +   L  H  +H
  Pavir.4KG125000.1.p 45 FRCRTCGRQFATFQALGGHRTSH 67
                         89**********99998888777 PP
2zf-C2H217.79.7e-0695117123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg++F++   L  H+r+H
  Pavir.4KG125000.1.p  95 HRCNSCGMVFPTGQALGGHMRRH 117
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.5E-94468IPR007087Zinc finger, C2H2
SMARTSM003550.284567IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.07E-745117No hitNo description
PROSITE profilePS5015710.8034572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.1E-1194119IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3995117IPR007087Zinc finger, C2H2
SMARTSM003550.02295117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MATTTARSTP EFLKLYLSLS TASKVIAKGA GGRRNLMAAA GGGAFRCRTC GRQFATFQAL  60
GGHRTSHNRP RVRADGLELL LGARPGKGAA ASDVHRCNSC GMVFPTGQAL GGHMRRHRAA  120
AFDAAAAPME EGDSESDDAG QHLMTNHTLF QFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG125000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828381.11e-58zinc finger protein ZAT11-like
SwissprotQ9LX859e-20ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A2S3IFT93e-57A0A2S3IFT9_9POAL; Uncharacterized protein
TrEMBLA0A3L6PK633e-57A0A3L6PK63_PANMI; Zinc finger protein ZAT8-like
STRINGPavir.Da01563.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.18e-22C2H2 family protein