PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG152700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 205aa    MW: 21629.3 Da    PI: 11.0281
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG152700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM996.8e-31221681128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkya.......tgkrknr.atk 79 
                          lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d+y+++Pwd+p+  +++a+e e yfF+ r             g    r at+
  Pavir.4KG152700.1.p  22 LPPGFRFRPTDEELVVQYLRRKALGVPLPA-AVIPVVrDLYSLDPWDIPAaaAADASEGEKYFFAVRPAGVGgsgcsgkLG-GGARaATA 109
                          79****************************.8899999***********522444455599*****999877544433222.3444489* PP

                  NAM  80 sgyWkatgkdkevlsk.....kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                          sg+Wk +gk+k+v+       ++ lvg+k+ ++f      k+ ++ +  + Wvmheyrl
  Pavir.4KG152700.1.p 110 SGRWKPSGKEKPVVLPrpcggGSLLVGVKRAMTFAprrnkKKASSAALAAGWVMHEYRL 168
                          **************99899877777**********7654222333344789******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3617177IPR003441NAC domain
PROSITE profilePS5100537.40322186IPR003441NAC domain
PfamPF023651.9E-2023168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MESAPVLVRH AGGVAVAALR QLPPGFRFRP TDEELVVQYL RRKALGVPLP AAVIPVVRDL  60
YSLDPWDIPA AAAADASEGE KYFFAVRPAG VGGSGCSGKL GGGARAATAS GRWKPSGKEK  120
PVVLPRPCGG GSLLVGVKRA MTFAPRRNKK KASSAALAAG WVMHEYRLAA PLHKNVSNSS  180
CSLFVHIPNH ALFFSLLRHH VLLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-222116814140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.39610.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG152700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820406.17e-93NAC domain-containing protein 18-like isoform X1
TrEMBLA0A3L6RHL25e-92A0A3L6RHL2_PANMI; NAC domain-containing protein 18-like
STRINGPavir.J04931.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.27e-26NAC domain containing protein 41