PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG162000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 571aa    MW: 65591.8 Da    PI: 7.7854
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG162000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1721.4e-2226118191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +fYn+Y     Fsvrks+ + +++++e t r++vCs++g++ee+  k + k+rr+r  tr+gC akl++ +++ +g+w+v+++  eHnH+
  Pavir.4KG162000.1.p  26 QFYNAYVLGKAFSVRKSYVEWNSDHTELTLRRYVCSRQGYHEEKYVKkEIKKRRPRDITRVGCPAKLVIALDRnSGQWYVKNFIDEHNHP 115
                          6***************************************99987663679999*****************999**************** PP

                 FAR1  89 lap 91 
                          lap
  Pavir.4KG162000.1.p 116 LAP 118
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-2126118IPR004330FAR1 DNA binding domain
PfamPF105512.7E-11225267IPR018289MULE transposase domain
PROSITE profilePS509669.99370410IPR007527Zinc finger, SWIM-type
SMARTSM005750.009385412IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MADLENLMEY SEIVSKMFAD EDEGYQFYNA YVLGKAFSVR KSYVEWNSDH TELTLRRYVC  60
SRQGYHEEKY VKKEIKKRRP RDITRVGCPA KLVIALDRNS GQWYVKNFID EHNHPLAPAD  120
LGCLLRSHRS ISDAQKAEIV ELGIQYGGYD KVGYTSRDLY NFCHLYKQEI IAAGDAQTII  180
SHLMERQNRD SDFFFKYMND GEGHLQGLFW CDTQCLLDYK AFGDVVVFDS TYKTNRYNLP  240
LVPFVGVNHH YHTVIFGCGI ISHLNIETRG YLGLRSNQRS KGMNSRLQMK LDGKMTLLEM  300
VQYYESCLTK VRRIEADDDA NALQSEPFTD PDASILEVNT KKRFTPNIFK MKVQFSVEAA  360
KKWSNRDMMY YVKCELTEEA NLKEISCSCR KLQSLGTPCS HIFFVLGIQD ESMLPDYCVL  420
VRWTMGAKRA FPPIRKSTMY DYSPTLLWHR GLRNLSLATF FVASLSTEGY GRNKRVLEQE  480
VDVIIPNAGA NEGNMYGPVL PQVPEVDCEE FRDVLDPMHV PARGAPKKKL KSSSDKTRAD  540
SKSSMCKEQG HNRPTCHLRP EVVFDNVHQS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1525531PKKKLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG162000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301886.11e-142protein FAR1-RELATED SEQUENCE 5
STRINGSb02g005850.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-46FAR1-related sequence 5