PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG162800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 183aa    MW: 19738 Da    PI: 10.3637
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG162800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.26.4e-1293151462
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                           +r rr ++NRe+ArrsR RK+ ++ +L   ++ L + N++L ++l++    +++++ +
  Pavir.4KG162800.1.p  93 ERRRRRTASNRESARRSRVRKQRQLGQLWAQAAHLRGDNRDLLDRLNRAIRDCDRVRRD 151
                          5899*******************************************998888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-990154IPR004827Basic-leucine zipper domain
PfamPF001707.0E-992149IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.09492155IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.4E-792148No hitNo description
SuperFamilySSF579596.47E-994142No hitNo description
PROSITE patternPS00036097112IPR004827Basic-leucine zipper domain
CDDcd147022.60E-13101146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MYPGEVASVV LPYLPTAAAA AFGFGPHYHP PAGDHFLFPG ISTDLITLPY AAAAHAQQQH  60
PAGGQPFFLG GAPGPHPHDE SAAAGGGERL AEERRRRRTA SNRESARRSR VRKQRQLGQL  120
WAQAAHLRGD NRDLLDRLNR AIRDCDRVRR DNARLGAERA GLQRRLQELA AAGDDETAAT  180
AT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19398RRRRRT
2106112RRSRVRK
3106113RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG162800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282636e-68KJ728263.1 Zea mays clone pUT6540 bZIP transcription factor (bZIP59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813468.13e-83basic leucine zipper 8-like
TrEMBLA0A2S3HJ487e-82A0A2S3HJ48_9POAL; Uncharacterized protein
TrEMBLA0A2T7DZ277e-82A0A2T7DZ27_9POAL; Uncharacterized protein
STRINGPavir.J40251.1.p4e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126