PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG180200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 314aa    MW: 33777 Da    PI: 10.2972
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG180200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57348.52.5e-15117205397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          +++lwse De++lL G   fk+++g  p   d+ +++e +++s+  +  +  +  K++rLK K+++ v         + s++h++ + +l
  Pavir.4KG180200.1.p 117 ISKLWSEADEVALLTGAAAFKDRNGFAPRRpDMPDLFEAIRDSLAPHLDQAKMYYKLKRLKSKYQHSVPG-------DSSTAHEHRVRDL 199
                          578***********************99988**********************************99998.......6788899999999 PP

               DUF573  92 skkiWg 97 
                          +  +Wg
  Pavir.4KG180200.1.p 200 CAALWG 205
                          999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-14118205IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPSKRPSPHA MDEAAAAAAA AAGRLRPSTP RSKKRSSRSK SRARSRDRRR SPNPNPSSRR  60
ERAPEPGYAA PAPSRKSDRR PKPRYIPDSA TLATAIAASA AAAAASGGGG RGSAGAISKL  120
WSEADEVALL TGAAAFKDRN GFAPRRPDMP DLFEAIRDSL APHLDQAKMY YKLKRLKSKY  180
QHSVPGDSST AHEHRVRDLC AALWGAELAR PAENDVVEAE EADEEDAGGD TEGAVRLPMV  240
KEVLGEYWKS NGQGLSSVSL EKGLALLGPQ EASVAEGKWR RQLEADMRMQ MRRHDLGKEV  300
YGLLIDAIKG LEP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.85130.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG180200.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811058.11e-158transcription factor STKL2
TrEMBLA0A3L6S1X31e-156A0A3L6S1X3_PANMI; Uncharacterized protein
STRINGPavir.Da01938.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-08DNA-binding storekeeper protein-related transcriptional regulator