PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG184700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 447aa    MW: 47878.4 Da    PI: 4.818
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG184700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-072263338
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         +r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  Pavir.4KG184700.1.p 22 ARACDGCLRRRARWYCAADDAFLCKGCDTSVHSAnplarrHE 63
                         578*****************************6567777776 PP
2CCT67.73.1e-23393436144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Pavir.4KG184700.1.p 393 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 436
                          9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-112067IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5522067IPR000315B-box-type zinc finger
PfamPF006434.0E-62364IPR000315B-box-type zinc finger
CDDcd000216.35E-82567No hitNo description
PfamPF062037.6E-18393435IPR010402CCT domain
PROSITE profilePS5101716.083393435IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MIATGSLAKK AAAAGAVGGK AARACDGCLR RRARWYCAAD DAFLCKGCDT SVHSANPLAR  60
RHERLRLRPT SPLCAPPAPA GEEARREPRD EVVPAWFKRK ARTPRGGHAK SLGQALSRRL  120
VVPEAASGAD SPEGRNGEEE GEVEEEEEQL LYRVPVFDPA LAEFCSPPPL EDAAAVASSC  180
NEDGAVEDPA KPAPAPPPAQ LFPDGHANFE PTYAELREFA ADMEALLGRG LDDGNEEDSS  240
FYMETLGLLD PVDADAARVK VEIDGSGACE ITSGTLAACG LELEAEASDD MLDIDFDYGS  300
PDQETPPDEK AGSNDTSADA QFLQTSLSLT LNYEAIIQSW GSSPWTGGGE RPHVKLDGSW  360
PHDYTGMWLV GGLAGHGGEE LCTPRLGVMD GGREARVSRY REKRRTRLFS KKIRYEVRKL  420
NAEKRPRMKG RFVKRATAGG SVAAVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403419RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.37660.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG184700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0391200.0BT039120.1 Zea mays full-length cDNA clone ZM_BFb0371J11 mRNA, complete cds.
GenBankBT0638060.0BT063806.1 Zea mays full-length cDNA clone ZM_BFc0109I10 mRNA, complete cds.
GenBankKJ7279400.0KJ727940.1 Zea mays clone pUT6036 C2C2-CO-like transcription factor (COL10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813938.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A3L6S2B20.0A0A3L6S2B2_PANMI; Zinc finger protein CONSTANS-LIKE 16-like
STRINGPavir.J30409.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-70B-box type zinc finger protein with CCT domain