PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG215200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 403aa    MW: 43895.7 Da    PI: 4.9727
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG215200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.48.1e-28958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l  +s
  Pavir.4KG215200.1.p  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFS 58
                         79********************************************9997 PP
2K-box20.91.5e-08111179977
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                            +++ e+lq+e++k + +++ L++ +R +  + +   s++e +  e+ L + l+++ ++K+ ll++++
  Pavir.4KG215200.1.p 111 PVNSNIEELQHEIRKYQHQVQALEERLRMFEPDLVALASMNEVEATEKFLMETLTRVEERKKYLLCNHM 179
                          567899********************8888888888889**************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.422161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-38160IPR002100Transcription factor, MADS-box
CDDcd002652.31E-36275No hitNo description
SuperFamilySSF554552.22E-29282IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SNRLSHFSGR  60
RRIEDVITKY INLPEHDRGG IVRNREYLMK MLTQLRCESD IAEQLTPNKG PVNSNIEELQ  120
HEIRKYQHQV QALEERLRMF EPDLVALASM NEVEATEKFL METLTRVEER KKYLLCNHMG  180
PFDPSPSDMQ HVFGLPPAPP QHEQPGDMGV SAFGVGGDVV SWFADGMPGA GPSIFGGPDP  240
ILAFREQAIF DSMRRDAGVD DAGVAVMCHV DQHGGGPGDD WQQAYTSAEL LSALIPSTPF  300
PLDDQVAAAA VRDDELDKTS TTAALQQPRF SVHELEAVMQ DSMAAPVLAP PMAPAPPPHV  360
HEQVEASAGS CSNNVVPPPG GDAAAAAQEQ QHGLPGGAVT IG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-18175174Myocyte-specific enhancer factor 2B
1tqe_Q1e-18175174Myocyte-specific enhancer factor 2B
1tqe_R1e-18175174Myocyte-specific enhancer factor 2B
1tqe_S1e-18175174Myocyte-specific enhancer factor 2B
6byy_A1e-18175174MEF2 CHIMERA
6byy_B1e-18175174MEF2 CHIMERA
6byy_C1e-18175174MEF2 CHIMERA
6byy_D1e-18175174MEF2 CHIMERA
6bz1_A1e-18175174MEF2 CHIMERA
6bz1_B1e-18175174MEF2 CHIMERA
6bz1_C1e-18175174MEF2 CHIMERA
6bz1_D1e-18175174MEF2 CHIMERA
6c9l_A1e-18175174Myocyte-specific enhancer factor 2B
6c9l_B1e-18175174Myocyte-specific enhancer factor 2B
6c9l_C1e-18175174Myocyte-specific enhancer factor 2B
6c9l_D1e-18175174Myocyte-specific enhancer factor 2B
6c9l_E1e-18175174Myocyte-specific enhancer factor 2B
6c9l_F1e-18175174Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG215200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813206.10.0agamous-like MADS-box protein AGL104
TrEMBLA0A2S3HK870.0A0A2S3HK87_9POAL; Uncharacterized protein
TrEMBLA0A2T7E0R20.0A0A2T7E0R2_9POAL; Uncharacterized protein
STRINGPavir.Da01298.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-75AGAMOUS-like 104