PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG215800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 345aa    MW: 36346.7 Da    PI: 6.6843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG215800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19168217255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++a+ +l+g
  Pavir.4KG215800.1.p 168 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAALAYDKAAFRLRG 217
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.49E-31167225No hitNo description
SuperFamilySSF541714.12E-22168225IPR016177DNA-binding domain
SMARTSM003802.6E-36168231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-32168226IPR001471AP2/ERF domain
PROSITE profilePS5103223.09168225IPR001471AP2/ERF domain
PfamPF008473.5E-13169217IPR001471AP2/ERF domain
PRINTSPR003672.3E-10169180IPR001471AP2/ERF domain
PRINTSPR003672.3E-10191207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAAIDLYTNQ LSSSSSSSSD QELMKALEPF IRSASSPTSS TSTTTSPFYP YTSALPQDSY  60
YYTYPAASSS YTVLLPPPLA PTATSFSQLP PLPPSSSSYT TPAAPYPTSS VDAAAGLALN  120
HLGPAQIEQI QAQIMLRQQR GLAASLLGPR AQPMKQAGAA PPSAAAKLYR GVRQRHWGKW  180
VAEIRLPRNR TRLWLGTFDS AEDAALAYDK AAFRLRGDAA RLNFPSLRRA GAHLAGPLDA  240
SVDAKLTAIC QGLAAAPAPK AAAGTVSAPD SPKASASTTT TEGDESVHSA GSPPSLPAFQ  300
QQQPATPLPE MASLDFTEAP WDESAALHLN KYPSWEIDWD SILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21164225163ATERF1
3gcc_A3e-21164225163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.234641e-153leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG215800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812857.11e-156ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A3L6PCC81e-170A0A3L6PCC8_PANMI; Ethylene-responsive transcription factor RAP2-13-like
STRINGPavir.Da01302.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-50related to AP2 4