PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG223800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 89aa    MW: 9755.61 Da    PI: 9.532
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG223800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07450346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         +WTt   + + +a + + ++   +W ++a+ +g g+t  ++k  +  
  Pavir.4KG223800.1.p  4 SWTTRQNKVFEEALATYDKDtpdRWQKVAQAVGGGKTVDDVKKQYKE 50
                         7*****************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.0E-6154IPR001005SANT/Myb domain
PROSITE profilePS5129313.172156IPR017884SANT domain
SuperFamilySSF466891.62E-11357IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSSWTTRQN KVFEEALATY DKDTPDRWQK VAQAVGGGKT VDDVKKQYKE LTKDVREMDT  60
AGLQNFQYGG SSSNTSKGGS SSNREQRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-154751082RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.426031e-112leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG223800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813658.14e-43uncharacterized protein LOC112890984 isoform X1
RefseqXP_025813659.14e-43uncharacterized protein LOC112890984 isoform X1
RefseqXP_025813661.11e-43protein RADIALIS-like 4 isoform X3
SwissprotQ1A1733e-19RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2S3HJZ16e-49A0A2S3HJZ1_9POAL; Uncharacterized protein
TrEMBLA0A2T7E0D36e-49A0A2T7E0D3_9POAL; Uncharacterized protein
STRINGPavir.Da01122.1.p5e-58(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-20RAD-like 6