PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG232600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 390aa    MW: 41188.5 Da    PI: 5.1938
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG232600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.79.9e-28145204259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES.--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg.eHnhe 59 
                           D ++WrKYGqK++kgs++pr+YYrC++  +C+++k+ver++ dp ++++tY+g +H h+
  Pavir.4KG232600.1.p 145 ADLWAWRKYGQKPIKGSPYPRGYYRCSTDkDCKARKQVERCRADPATLIVTYTGgDHSHP 204
                          599***********************9998**********************95389997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28139206IPR003657WRKY domain
SuperFamilySSF1182903.79E-23143206IPR003657WRKY domain
SMARTSM007743.2E-32144205IPR003657WRKY domain
PfamPF031062.0E-22146204IPR003657WRKY domain
PROSITE profilePS5081128.185146206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEGDLGWCCS GGSNNWDLHA VVRSACSGGP PPASNDDSFS WLLQTPPASE DQLLDAAGSQ  60
PPLADPAVDD LCLQAFFAST KLETPQPSSP RNEAPPQQYK ADGPPGKLQT SSRAGGAGPS  120
RSKRKSKKSQ VKKEVTRVPV GGPPADLWAW RKYGQKPIKG SPYPRGYYRC STDKDCKARK  180
QVERCRADPA TLIVTYTGGD HSHPVPLQRN SLSGTTRNKA QAQPVSPYPG KEAPKSEAAP  240
SASGTDTKSQ GSPSMSFGLS PRTPRRSPSL QGVQYKDEED DDAAPSSRLL LLEGTEMEGR  300
DAEEDDVLVY LMPEEETAPA GPGKGSGCED VMLFPKPDEP PPTTCSSRTD GGGGEAAAQV  360
MNIGEETFSI SGLSAWEAAS ETRRRAAGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-16129206379Disease resistance protein RRS1
5w3x_D6e-16129206379Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG232600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812935.10.0WRKY transcription factor 22-like
TrEMBLA0A3L6PD890.0A0A3L6PD89_PANMI; WRKY transcription factor 22-like
STRINGPavir.Da00956.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-36WRKY DNA-binding protein 27