PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG233600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 193aa    MW: 20835.6 Da    PI: 6.808
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG233600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.66.5e-081156449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +++ +r  +f kRr++++  A  LS   +a vavi fs+ g+ y +
  Pavir.4KG233600.1.p 11 DSEHQRRESFRKRRATLFGMARDLSEEFGAHVAVIAFSPAGEPYAF 56
                         67889999*********************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0017159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.619660IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-12671IPR002100Transcription factor, MADS-box
PfamPF003193.9E-121256IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAKDKELRPC DSEHQRRESF RKRRATLFGM ARDLSEEFGA HVAVIAFSPA GEPYAFGAPT  60
ADSVLRTYLP AADGPAPNPT PHAPSPGAAA GVGAETAGQA AARVAGMRRE VDETKALVTE  120
EWARVAAALE KVRAAQRAAQ KQNWWEVDVE ALGEEELPVF MRALEMLKAE VQERINAMAS  180
ARMSLPGVRK QQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG233600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813917.11e-104agamous-like MADS-box protein AGL61
TrEMBLA0A2T7DY991e-103A0A2T7DY99_9POAL; Uncharacterized protein
STRINGPavir.Da01716.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7989512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-12AGAMOUS-like 61