PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG235800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 123aa    MW: 13242.6 Da    PI: 6.95
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG235800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.7e-17959255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr +  +g++ AeIrdp  +   +r ++g+f+taeeAa+a+++ + +++g
  Pavir.4KG235800.1.p  9 KYRGVRKRQ-WGKFSAEIRDPERG--GARKWIGTFDTAEEAARAYDREAFAMKG 59
                         8*****888.**********8333..4**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-29968IPR001471AP2/ERF domain
SMARTSM003808.4E-31973IPR001471AP2/ERF domain
PROSITE profilePS5103222.774967IPR001471AP2/ERF domain
CDDcd000181.87E-26968No hitNo description
PfamPF008474.6E-11959IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22969IPR016177DNA-binding domain
PRINTSPR003672.3E-101021IPR001471AP2/ERF domain
PRINTSPR003672.3E-103349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEDDKREGKY RGVRKRQWGK FSAEIRDPER GGARKWIGTF DTAEEAARAY DREAFAMKGA  60
TAVLNFPVEA AGRGGAGGAS SSAPATTGAG RGRVPDSEKV ELEYLDSRVL DELLAEGNNK  120
NY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-26710912114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG235800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275121e-70KJ727512.1 Zea mays clone pUT5371 AP2-EREBP transcription factor (EREB95) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985680.12e-50ethylene-responsive transcription factor ERF096
SwissprotQ9LTC53e-31ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A368SVR84e-49A0A368SVR8_SETIT; Uncharacterized protein
STRINGPavir.Da01034.1.p6e-72(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.17e-22Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]