PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG241600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20026.8 Da    PI: 8.7797
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG241600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.9e-191558245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          i++  +r+vtfskR+ g+lKK +ELS LC+a va ++fs+ g+
  Pavir.4KG241600.1.p 15 HIKDADRREVTFSKRKSGLLKKGSELSLLCGAHVAFVVFSPGGR 58
                         59999***********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-24665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.053666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-22775IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-17828IPR002100Transcription factor, MADS-box
PfamPF003191.1E-191660IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGRPSKGRQR IEIRHIKDAD RREVTFSKRK SGLLKKGSEL SLLCGAHVAF VVFSPGGRAF  60
ALGTPSVDHV LRRFDPPPGD EDDGDLLALL QDGDCMSAAD RGAVEAIVRR TEETKARAAA  120
EKARMDAVGE KVRQAVVKAG GKFWWEADVE ALGEAELPEF ARELRRLRDN VQRHVDQLLA  180
SA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.323560.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG241600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811768.11e-115agamous-like MADS-box protein AGL62
TrEMBLA0A2S3HIR91e-113A0A2S3HIR9_9POAL; Uncharacterized protein
TrEMBLA0A2T7DXP11e-113A0A2T7DXP1_9POAL; Uncharacterized protein
STRINGPavir.J29996.1.p1e-125(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-13AGAMOUS-like 62