PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG262800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 797aa    MW: 90204.9 Da    PI: 9.8344
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG262800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.21.1e-17139218190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn Y+ e GF vr  + +k+ +++  tk + vCs+eg +++++++         + rt+Cka++++++++d+ w++++++  HnH l+
  Pavir.4KG262800.1.p 139 DFYNLYSWEKGFGVRFGRGRKN-DSKYQTKLDIVCSCEGLNKNKRSA---------SIRTDCKAMIRLHRRSDHSWYISRVNDTHNHRLT 218
                          6*****************9999.666699***********9997655.........9******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-14139218IPR004330FAR1 DNA binding domain
PROSITE profilePS509666.589164201IPR007527Zinc finger, SWIM-type
PfamPF105512.6E-12352432IPR018289MULE transposase domain
PROSITE profilePS509669.47620655IPR007527Zinc finger, SWIM-type
PfamPF044348.5E-4627650IPR007527Zinc finger, SWIM-type
SMARTSM005750.0027630657IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MGPIQSSLAP GTSRDQQCSK RIAADFIPAP SEPTITWQQG DAQVAIVAAI AEKDPLQVQQ  60
GDCQALDCST RTGTPTNSTS SPTTGPKRRA RREGPDYRIA PAEETAMIKA LLRASMSPGE  120
AIFFPHEGTI FNSREEARDF YNLYSWEKGF GVRFGRGRKN DSKYQTKLDI VCSCEGLNKN  180
KRSASIRTDC KAMIRLHRRS DHSWYISRVN DTHNHRLTEA YGENKHWKSH SYIDPSTKDL  240
IKKLRENNIS LGRICNILGA TDGGSRSEMR KESVRSICAK MDQENMRDDI GKTLKLLDTM  300
KETDSGLEVR FQLDKDGASP RVCHILLGIS LKSMLWCTGK NRIDYSSLGD AITFDTTYRT  360
NLYSLPFGLF MGITNHFQSI VLGGLLLTSE KTADFYFPSL LHPDQCAAMA KAVKSTMKET  420
RHRWCRWHVL KNAKDRLGKV YSKHKGFKHE FNKLVTDEID ITKFERTWDT LVKKYKLSKN  480
KFLKRLFKYR EKWAKPYFMG IFCVGMTSTQ RSESANHMLK TFIQRAAPMH LFVVKFNEFQ  540
SDRNDQESKE SFVTNQVPRK QRVGIPIENH ANTIYTRAMY EKFYDELFES GRFAITSKIS  600
ESEYLVTDTK QDTEEATTQF TLTLQGTSKI TCQCGLFEHM GMLCRHALKV RVHLDRPEIP  660
AGNIMRRWTK DGIEHSLSVD TKATMAAHND NMRKKLLLTR VFEIANKEAT LSETAFHQAI  720
EAMKDSTNPP LEPALADITN TSTPAITEVR PTACPPRTML GGRPPNTGLQ SWLASRKRSS  780
NKTANSASAF SCGLAR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG262800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1B6Q0S60.0A0A1B6Q0S6_SORBI; Uncharacterized protein
STRINGPavir.Ab02590.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-54FAR1-related sequence 5