PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG265300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 377aa    MW: 40198.8 Da    PI: 4.9391
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG265300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.61.1e-29541442101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k++e++ed++++ ++sw +  nsfvv+d++ +a  +Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++         weF+h  F +g++
  Pavir.4KG265300.1.p  54 FLAKTFELVEDPATDGVVSWGAARNSFVVWDPHALAAGLLPRRFKHANFSTFLRQLNTYGFRKVSPDR---------WEFAHADFLAGQR 134
                          9********************999******************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll +i+r++
  Pavir.4KG265300.1.p 135 HLLANIRRRH 144
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.72E-3049143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-5050143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3250143IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-155477IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-2654143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1592104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-15105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEHPAAVTVK QEEREDDEVV VVLDADGDAG GRAAAAPAPE PWRTPPPASQ VPPFLAKTFE  60
LVEDPATDGV VSWGAARNSF VVWDPHALAA GLLPRRFKHA NFSTFLRQLN TYGFRKVSPD  120
RWEFAHADFL AGQRHLLANI RRRHGAAGGG SAASSGANKT GASGSGGGCE SELERLRRDQ  180
EALARLRRGQ QERLRRDQEA LARLRRGQQE ARAQLLDMER RLRGTESRQE QCTAFLARAV  240
GSPGFLDGLL ARRSHAAPPV GAGRKRRLLD AAAAAAPDVL AFEELALAAG AEVEAAPVPT  300
TAAASQGSNS AATATDMIWY ELLGEEQVEI DAAVEELVAA AAAAEAAEPW GEMGDEEVEE  360
LVQQIGYLGS PSPWSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-244914315120Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.200374e-77stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG265300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727019e-84AK372701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3009M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681569.11e-154putative heat stress transcription factor A-6a
SwissprotQ5Z6A44e-97HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLK3XXW71e-153K3XXW7_SETIT; Uncharacterized protein
STRINGSi006775m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-60heat shock transcription factor A2