PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG266300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 190aa    MW: 20286.9 Da    PI: 9.3736
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG266300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00117698123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  Cg+ F +   L  H  +H
  Pavir.4KG266300.1.p 76 FRCRTCGRAFATFQALGGHRTSH 98
                         89**********99998888777 PP
2zf-C2H215.26.1e-05127148223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C+ Cg +Fs+   L  H+r+H
  Pavir.4KG266300.1.p 127 RCNTCGVVFSTGQALGGHMRRH 148
                          8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.1E-976100IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.94976103IPR007087Zinc finger, C2H2
SMARTSM003550.387698IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.39E-776148No hitNo description
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM003550.054126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743126153IPR007087Zinc finger, C2H2
PfamPF139125.0E-11127150IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MQYIYIHSTS YVIHPSYIIS SFPFKATTTA RPTPAATNLL RLFLTLSPAS RVISKQQGQG  60
GGCRATRLDG AGTGEFRCRT CGRAFATFQA LGGHRTSHKR PRVRADCLDL LPGARPGKGA  120
AASDVLRCNT CGVVFSTGQA LGGHMRRHRS PPATIKFVAL SDDGEGDDDD IEDDDASHLS  180
TATSFIKFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG266300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980041.19e-49zinc finger protein ZAT12
TrEMBLA0A368SBJ92e-47A0A368SBJ9_SETIT; Uncharacterized protein
STRINGPavir.Da00815.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-21C2H2 family protein