PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG271900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 462aa    MW: 48634.6 Da    PI: 6.9408
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG271900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36e-093984361854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  Pavir.4KG271900.2.p 398 MFENflRPYPKDNEKEMLAARSGLSRSQVSNWFINARVR 436
                          57766689*****************************88 PP
2BELL27.86.1e-10267337172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          e++++q+ k+ L +ll+ +d+r +q+v+++q  +s +  +ag g  ++ + +A  a+S  +r L+ +i++ i
  Pavir.4KG271900.2.p 267 EEHAHQQLKNDLQKLLQLLDQRCNQCVDEIQSAASKYGGMAGGGG-ALLAPFAHGAVSAAHRRLRARITGEI 337
                          56899999**********************************999.6789******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0017198335IPR006563POX domain
PfamPF075262.2E-17208334IPR006563POX domain
PROSITE profilePS5007111.953377440IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-26379452IPR009057Homeodomain-like
SMARTSM003891.6E-7380444IPR001356Homeobox domain
CDDcd000865.56E-12380441No hitNo description
SuperFamilySSF466894.19E-16380449IPR009057Homeodomain-like
PfamPF059206.0E-16397436IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MTGNASYQQL GLGVDAMMSG CFVSSGADTQ VFHDGSFGFG EPADAAASFL VDGGSMLAGQ  60
LQLIRAAATQ SVSPEEMRGG GGAYGPSPSD VTVAHHAPKV AKLAGEMETS WIHEPYYCGP  120
TWFSGDGLRD PFAAAASELS LRLRAGSSLP AGAVNISLPD QSSEVSCSGL THASSSAAGS  180
AFQTPCGGGG DMARPGPLHF SQVLPRWSGY AHVTQQTLDE FVVCLLQDVA MFAGSAGGGG  240
GEASCPLPVS SSSKTTSSNA SAFLGSEEHA HQQLKNDLQK LLQLLDQRCN QCVDEIQSAA  300
SKYGGMAGGG GALLAPFAHG AVSAAHRRLR ARITGEIAAA SRRGAPPTLT LADRERSWES  360
AFIQKHWALR QLRRGDQQSW RPQRGLPEKS VAVLKAWMFE NFLRPYPKDN EKEMLAARSG  420
LSRSQVSNWF INARVRLWKP MIEEMYEDLK KASGGGEGVA A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.148840.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG271900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813413.10.0homeobox protein ATH1-like
TrEMBLA0A3L6S1C50.0A0A3L6S1C5_PANMI; Homeobox protein ATH1-like
STRINGPavir.Da00778.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-46homeobox gene 1