PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG310800.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 437aa MW: 46892.3 Da PI: 10.0995

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG310800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.5	6.2e-13	129	171	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNka 44 k rr+++NReAAr+sR+RKka+i++Le + + Le+e+++ Pavir.4KG310800.2.p 129 KMLRRLAQNREAARKSRLRKKAYIQQLESgriRLAHLEQEMQM 171 6789***********************9544489999999864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.8E-9	124	170	No hit	No description
SMART	SM00338	8.2E-5	125	178	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.588	127	157	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.38E-7	129	162	No hit	No description
Pfam	PF00170	3.2E-10	129	172	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	132	147	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.6E-25	208	279	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MTCRPIWIKP YSSTSMASNK QLISHQFKNN NRDLFLRAET LNIFPSQPMH IEPPPKGSMS 60 SSAAAAQVAG PSKTSQAAPS KAGGAPLAAG KSSKASIKRE GSAGGKHGGA DGAGPSSSDQ 120 EGPRTPDPKM LRRLAQNREA ARKSRLRKKA YIQQLESGRI RLAHLEQEMQ MARTHQGALW 180 GTGTLSPDAA LFNLEYERWL GDHSKVVARL RAAAEEHRPD GELRAYADEA ASHYGALMGL 240 KARAAAADPL HLLSGLWKGA AERCFLWIGG FRPSELINVA VRHVEPLAEQ QAAGARDVEQ 300 AARRAEEALD AELEALLRSL SEVVASDAQQ PPGVFGGQLY QHLPGADAAA AAGYMGMGHM 360 HMALAMDKLA TLGTFLRQAD ELRMQALQAL RQILTARQAA RCFVAVDDYF CRLRALSTLW 420 TTTRTAAAQL ARGPAG*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MTCRPIWIKP YSSTSMASNK QLISHQFKNN NRDLFLRAET LNIFPSQPMH IEPPPKGSMS  60
SSAAAAQVAG PSKTSQAAPS KAGGAPLAAG KSSKASIKRE GSAGGKHGGA DGAGPSSSDQ  120
EGPRTPDPKM LRRLAQNREA ARKSRLRKKA YIQQLESGRI RLAHLEQEMQ MARTHQGALW  180
GTGTLSPDAA LFNLEYERWL GDHSKVVARL RAAAEEHRPD GELRAYADEA ASHYGALMGL  240
KARAAAADPL HLLSGLWKGA AERCFLWIGG FRPSELINVA VRHVEPLAEQ QAAGARDVEQ  300
AARRAEEALD AELEALLRSL SEVVASDAQQ PPGVFGGQLY QHLPGADAAA AAGYMGMGHM  360
HMALAMDKLA TLGTFLRQAD ELRMQALQAL RQILTARQAA RCFVAVDDYF CRLRALSTLW  420
TTTRTAAAQL ARGPAG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.27629	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG310800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055042	0.0	BT055042.1 Zea mays full-length cDNA clone ZM_BFc0123E11 mRNA, complete cds.
GenBank	KJ727604	0.0	KJ727604.1 Zea mays clone pUT5464 bZIP transcription factor (bZIP70) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965885.1	0.0	transcription factor TGAL8 isoform X1
Refseq	XP_004965886.1	0.0	transcription factor TGAL8 isoform X2
Swissprot	Q69T21	1e-148	TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBL	K3XWV9	0.0	K3XWV9_SETIT; Uncharacterized protein
TrEMBL	K3XX63	0.0	K3XX63_SETIT; Uncharacterized protein
STRING	Pavir.Db00756.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	2e-71	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.4KG310800.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]