PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG324200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 280aa MW: 30081.2 Da PI: 4.5428

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG324200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.7	5.3e-13	119	171	4	56
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +k+ +r ++NR +A +sR+RKk +i+ Le+k+k Leae ++L l+ + e Pavir.4KG324200.1.p 119 SKKKMRQMRNRDSAMKSRERKKSYIKDLETKSKYLEAECRRLSYALQCYATEN 171 799*************************************9998877666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.2E-13	115	179	No hit	No description
SMART	SM00338	2.6E-5	116	180	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.484	118	181	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.38E-11	120	178	No hit	No description
Pfam	PF00170	8.6E-10	120	176	IPR004827	Basic-leucine zipper domain
CDD	cd14704	3.72E-14	121	172	No hit	No description
PROSITE pattern	PS00036	0	124	138	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MDLDLFGEPA GVSDLIVPSP PPPAPARDAE AGSPESVTSR ASPPGGEALM EIERFLMQEG 60 EAELGGEAEG INVEEFFDAL YDGGEGKEGE AGGSTDEDSG RDEVVEVVTP EVDGDDPVSK 120 KKMRQMRNRD SAMKSRERKK SYIKDLETKS KYLEAECRRL SYALQCYATE NMVLRQSLLK 180 DRPVGAPTAM QESAVLTETL PLVSLLWLVS IVCLFLMPGL PNRSPAAPSS AGRGLGMVAG 240 KTSSENPEIL ELILHGRRCK STRAKIKLDT VPFHAVAAC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.13030	0.0	callus\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG324200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT086464	0.0	BT086464.1 Zea mays full-length cDNA clone ZM_BFc0169L15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811329.1	1e-164	LOW QUALITY PROTEIN: bZIP transcription factor 50-like
Swissprot	Q69XV0	1e-105	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	A0A3L6RZQ2	1e-161	A0A3L6RZQ2_PANMI; BZIP transcription factor 60-like
STRING	Pavir.Da00593.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6934	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	1e-13	basic region/leucine zipper motif 60

Link Out ? help Back to Top
Phytozome	Pavir.4KG324200.1.p

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]