PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG329100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 362aa    MW: 39791.7 Da    PI: 10.2513
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG329100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26e-13231091499
                          T-EE--HHH.HTT---....--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  14 grlvlpkkfaeehggkke..esktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          + l++p +fa++ gg++       + l ++ g++W+ +l+  +++g+   l++GW +F+ a+g+++g +vvF+l++r  +  +vk+f++
  Pavir.4KG329100.1.p  23 HELRVPGEFAARLGGEEGaaAAAVVLLVSPLGKVWRAELRRAGGGGGpWQLGGGWAGFAAAHGIEAGWSVVFRLERRGVA--TVKAFDA 109
                          6799******9994444322556788999**********65444444899***********************9987666..8988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-158112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-158112IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-912110IPR003340B3 DNA binding domain
PfamPF023621.0E-1023109IPR003340B3 DNA binding domain
PROSITE profilePS5086310.88425110IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-7133210IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.18272361IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-11296360IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-10304359IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-7304351IPR003340B3 DNA binding domain
PROSITE profilePS5086310.25309361IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAPVVHRTRP KFAAALLSPA CLHELRVPGE FAARLGGEEG AAAAAVVLLV SPLGKVWRAE  60
LRRAGGGGGP WQLGGGWAGF AAAHGIEAGW SVVFRLERRG VATVKAFDAA GCLARFCTPH  120
AGGHGVAAGK NRSRFIRLLH TDDLEKMRIP DKFVQEHLTD NYPSTQKAMI FSPLGKFWRV  180
ELGNILVFRY EDNMVFTVEA FMQNGCLKEY EAPAADMTDD AVGPSAVPQQ GVKELVVSPV  240
KKKRKTRNEN TCLDVYRKKS NLPPISSKKV ASQKKLVSTV PRHSFTKRIT SWSFGTMQNH  300
TENVDGNTRS WPVWFNTANT YGYITGQGWK KFCCENKLKE GNRCTFSVIE TTVWHVTILS  360
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240258KKKRKTRNENTCLDVYRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG329100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0803201e-45GU080320.1 Saccharum hybrid cultivar R570 clone BAC 249C12, partial sequence.
GenBankKF1847561e-45KF184756.1 Saccharum hybrid cultivar R570 clone BAC 249C12 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681867.10.0LOW QUALITY PROTEIN: putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL71e-116Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A2T7DWC30.0A0A2T7DWC3_9POAL; Uncharacterized protein
STRINGPavir.Da00487.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.18e-08B3 family protein