PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG331500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 257aa    MW: 27062.2 Da    PI: 10.8614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG331500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.8e-103482255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GV ++   +r+ A ++ p   g ++  +lg++ t+eeAa a++aa+++  g
  Pavir.4KG331500.1.p 34 RYRGVQRR--GNRYGAVVWNP--AG-KRAMWLGSYATPEEAAHAYDAAARRVLG 82
                         79***644..68*****6665..33.6**********************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-133491IPR016177DNA-binding domain
SMARTSM003804.4E-123496IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-173491IPR001471AP2/ERF domain
PfamPF008473.5E-53480IPR001471AP2/ERF domain
PROSITE profilePS5103214.9743490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MPGGSVIELA REAAAAARNE RRARGDAPLP PPRRYRGVQR RGNRYGAVVW NPAGKRAMWL  60
GSYATPEEAA HAYDAAARRV LGRWARPNFP DPAARRRPTA LSAAVGALED LVRAARADQE  120
PAARQQQQQP APRAQVPFPH WAAPALAPAG AAAQPQRQQR AVFTYRHAAT PSSPAAAIYA  180
AAYDGPFFEV TLLPSAYAAA PELNRPASSA GPVGGASLSP SAAAPERLIE PDQAVVGDNF  240
TDDGASSSSA TRAFFW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG331500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811437.14e-66ethylene-responsive transcription factor ABI4-like
TrEMBLA0A2T7DW853e-68A0A2T7DW85_9POAL; Uncharacterized protein
STRINGPavir.Db00701.1.p1e-26(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17311610