PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG334800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 385aa    MW: 41569.3 Da    PI: 8.8071
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG334800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.43.5e-133976143
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAa 43
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa
  Pavir.4KG334800.1.p 39 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAA 76
                         78*******************......55**********77776 PP
2AP240.37.9e-13141191155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV+++k  g+W+A+I         +k+++lg + t+ eAa+a+++a+ k +g
  Pavir.4KG334800.1.p 141 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYNTEMEAAQAYDKAAIKCYG 191
                          789*******.7******77733....25**********77**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.4E-63975IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1139107IPR016177DNA-binding domain
PROSITE profilePS5103212.35240106IPR001471AP2/ERF domain
CDDcd000189.97E-1840108No hitNo description
SMARTSM003802.5E-2640112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-1240106IPR001471AP2/ERF domain
PfamPF008471.1E-8141191IPR001471AP2/ERF domain
CDDcd000186.25E-24141201No hitNo description
SuperFamilySSF541714.38E-17141200IPR016177DNA-binding domain
PROSITE profilePS5103215.593142199IPR001471AP2/ERF domain
SMARTSM003808.2E-34142205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-17142199IPR001471AP2/ERF domain
PRINTSPR003673.0E-6143154IPR001471AP2/ERF domain
PRINTSPR003673.0E-6181201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
AAPAPPQAAE QCHVSASATD QWARSASRKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  60
GKQVYLGGFD TAQAAASLFS GPCLDSRAYD QAAIKFRGVN ADINFTLSDY KDEIKKMKNF  120
SKEEFVQVLR RQGAGFVRGS SRFRGVTQHK CGKWEARIGQ LMGKKYVYLG LYNTEMEAAQ  180
AYDKAAIKCY GKEAVTNFEA QTYDEELQVQ PWDGELDLEL SLGCAGGDPS TVAVEPCSSA  240
PSRQRTMTLT LDLPEDDEKT GAGHPHGSIR TMPSPAPGTF RLLPPAGDHA HVPGTGVRDD  300
TAHMLQMGQV GSSGGAAAAH MRWPNGGNNW APPYATARAD DDAAAAAAAA AASSGFPPGQ  360
LGRSRPRRPG PAAAERVQHQ QQWH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG334800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403461e-158BT040346.1 Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds.
GenBankKJ7269411e-158KJ726941.1 Zea mays clone pUT3487 AP2-EREBP transcription factor (EREB55) mRNA, partial cds.
GenBankZMU414661e-158U41466.1 Zea mays Glossy15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810716.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8B0I81e-138AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A3L6RYR20.0A0A3L6RYR2_PANMI; Uncharacterized protein
STRINGPavir.Da00466.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.27e-81AP2 family protein