PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG334800.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 321aa    MW: 34520.7 Da    PI: 7.6365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG334800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.76.1e-1377127155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV+++k  g+W+A+I         +k+++lg + t+ eAa+a+++a+ k +g
  Pavir.4KG334800.3.p  77 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYNTEMEAAQAYDKAAIKCYG 127
                          789*******.7******77733....25**********77**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.5E-5248IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-71043IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-101042IPR001471AP2/ERF domain
PROSITE profilePS5103210.1381042IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1777136IPR016177DNA-binding domain
CDDcd000187.16E-2577137No hitNo description
PfamPF008478.0E-977127IPR001471AP2/ERF domain
PROSITE profilePS5103215.59378135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1778135IPR001471AP2/ERF domain
SMARTSM003808.2E-3478141IPR001471AP2/ERF domain
PRINTSPR003672.2E-67990IPR001471AP2/ERF domain
PRINTSPR003672.2E-6117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MRGFLLLFPL FLGGFDTAQA AARAYDQAAI KFRGVNADIN FTLSDYKDEI KKMKNFSKEE  60
FVQVLRRQGA GFVRGSSRFR GVTQHKCGKW EARIGQLMGK KYVYLGLYNT EMEAAQAYDK  120
AAIKCYGKEA VTNFEAQTYD EELQVQPWDG ELDLELSLGC AGGDPSTVAV EPCSSAPSRQ  180
RTMTLTLDLP EDDEKTGAGH PHGSIRTMPS PAPGTFRLLP PAGDHAHVPG TGVRDDTAHM  240
LQMGQVGSSG GAAAAHMRWP NGGNNWAPPY ATARADDDAA AAAAAAAASS GFPPGQLGRS  300
RPRRPGPAAA ERVQHQQQWH *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG334800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403461e-167BT040346.1 Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds.
GenBankKJ7269411e-167KJ726941.1 Zea mays clone pUT3487 AP2-EREBP transcription factor (EREB55) mRNA, partial cds.
GenBankZMU414661e-167U41466.1 Zea mays Glossy15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810718.11e-166floral homeotic protein APETALA 2-like isoform X2
SwissprotB8B0I81e-103AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A2T7DW681e-165A0A2T7DW68_9POAL; Uncharacterized protein
STRINGPavir.Da00466.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-57AP2 family protein