PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG344000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 253aa    MW: 27767.2 Da    PI: 10.5742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG344000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.61.2e-21118167255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +g+W+AeIrdp     +  kr++lg+f+tae+Aa+a++ a+++l+g
  Pavir.4KG344000.1.p 118 RFRGVRRRP-WGKWAAEIRDP-----NlhKRVWLGTFDTAEDAAAAYDSAALRLRG 167
                          69*******.**********9.....445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.474118175IPR001471AP2/ERF domain
PfamPF008471.6E-14118167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-30118175IPR001471AP2/ERF domain
SMARTSM003802.5E-36118183IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22118175IPR016177DNA-binding domain
PRINTSPR003673.6E-11119130IPR001471AP2/ERF domain
CDDcd000181.70E-14126174No hitNo description
PRINTSPR003673.6E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MRSLQSFPQF LLLPMWVRGG CGHRRRPKCF LLPRQPQPTG HSQRKAPNPP NTQAPTHPVE  60
SAELMMDATR LLDADEHHQQ IGLGKTNTTV VRDHHPTMED KQRTPSGEGL AQGTGRRRFR  120
GVRRRPWGKW AAEIRDPNLH KRVWLGTFDT AEDAAAAYDS AALRLRGRRA VTNFHPPPTV  180
ISSSAVTSET SASSAPPSTR PVVTSPGGPH SPTASPPPSP QSSVDYDATL WFHREPLGDL  240
DDLFSTPDLL AP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201181741471Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG344000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Da00220.1.p1e-104(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-12cytokinin response factor 4