PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG346300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 320aa    MW: 34621.8 Da    PI: 6.0072
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG346300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072562892154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  Pavir.4KG346300.1.p 256 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 289
                          569*****************************87 PP
2ELK30.77.1e-11210231122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++L+++++E++
  Pavir.4KG346300.1.p 210 ELKHELKQGYREKLVDIREEIM 231
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194286IPR005540KNOX1
PfamPF037901.5E-164582IPR005540KNOX1
SMARTSM012561.5E-2599154IPR005541KNOX2
PfamPF037911.0E-16107153IPR005541KNOX2
PROSITE profilePS5121310.196210230IPR005539ELK domain
SMARTSM011883.8E-4210231IPR005539ELK domain
PfamPF037891.0E-6210231IPR005539ELK domain
PROSITE profilePS5007111.758230293IPR001356Homeobox domain
SuperFamilySSF466897.7E-16232296IPR009057Homeodomain-like
SMARTSM003893.3E-10232297IPR001356Homeobox domain
CDDcd000861.16E-11233294No hitNo description
Gene3DG3DSA:1.10.10.602.4E-24237294IPR009057Homeodomain-like
PfamPF059203.4E-18250289IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAFHYPDHAL AMDPAAGVGA AVNPSFVSPG GGGVGGGGGG WEREKAAIAA HPLYERLLEA  60
HVACLRVATP VDQLPRIDAQ IAARPPPMAA AAAAAAAAAG GAQSGGEELD LFMTHYVLLL  120
CSFKEQLQQH VRVHAMEAVM ACWELEQTLQ SLTGASPGEG TGATMSDDED NQVDSESNIF  180
DGNEGSDGMG FGPLMLTEGE RSLVERVRQE LKHELKQGYR EKLVDIREEI MRKRRAGKLP  240
GDTASTLKAW WQAHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPASSSS  300
DKSKRKRNTA GDGNAEQSW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286306RKRNWHSNPASSSSDKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.22480.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG346300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2414380.0AK241438.1 Oryza sativa Japonica Group cDNA, clone: J065162G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965737.10.0homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLK3XYC40.0K3XYC4_SETIT; Uncharacterized protein
STRINGPavir.J37473.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-142KNOTTED1-like homeobox gene 3