PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG350000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 156aa    MW: 16759.5 Da    PI: 9.8482
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG350000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.84.9e-222170255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr+++ +g+W+AeIrdp     +  kr++lg+f+tae+Aa+a++ a+++l+g
  Pavir.4KG350000.1.p 21 RFRGVRRRP-WGKWAAEIRDP-----NlhKRVWLGTFDTAEDAAAAYDSAALRLRG 70
                         69*******.**********9.....445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-362184IPR001471AP2/ERF domain
PfamPF008476.4E-152170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-312178IPR001471AP2/ERF domain
PROSITE profilePS5103224.4742178IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-232179IPR016177DNA-binding domain
PRINTSPR003671.8E-112233IPR001471AP2/ERF domain
CDDcd000182.04E-142977No hitNo description
PRINTSPR003671.8E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEDKQRTPSG EGLAQGTGRR RFRGVRRRPW GKWAAEIRDP NLHKRVWLGT FDTAEDAAAA  60
YDSAALRLRG RRAVTNFHPS PTVTSSSAVT SETSASSAPP STRPVVTSPG GPHSPTASPP  120
PSPQSSVDYD ATLWFHREPL GDLDDLFSTP DLLAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2121771471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG350000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874690.13e-28pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO825032e-24CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLA0A1E5V4C03e-30A0A1E5V4C0_9POAL; Uncharacterized protein
STRINGPavir.Da00220.1.p1e-106(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.15e-12cytokinin response factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]