PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG359300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 26239.6 Da    PI: 5.07
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG359300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-27959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien   rqvtfskRr+g+lKKA+EL vLCda+v v++fs++gkl+ey+s
  Pavir.4KG359300.1.p  9 KRIENRVSRQVTFSKRRKGLLKKAHELAVLCDADVGVVVFSERGKLFEYAS 59
                         79***********************************************86 PP
2K-box57.36.6e-2084160984
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                           ++ +++++ +e++ L++e+e+Lq+      GedL+sL s+ eL +LeqqLe++l+k+R++K+ell++ +eelq k 
  Pavir.4KG359300.1.p  84 HCTDHQQQMIEEISTLRREYEQLQSRVMACPGEDLSSLtSVDELDELEQQLESALTKVRARKDELLTSLTEELQLKI 160
                          5778899*******************************5689********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-39160IPR002100Transcription factor, MADS-box
CDDcd002657.99E-39272No hitNo description
SuperFamilySSF554553.66E-30284IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-293859IPR002100Transcription factor, MADS-box
PfamPF014869.1E-1786159IPR002487Transcription factor, K-box
PROSITE profilePS5129712.13789179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGRVEMKR IENRVSRQVT FSKRRKGLLK KAHELAVLCD ADVGVVVFSE RGKLFEYASP  60
PASLTDLIRR YEAVTNTQLL QDTHCTDHQQ QMIEEISTLR REYEQLQSRV MACPGEDLSS  120
LTSVDELDEL EQQLESALTK VRARKDELLT SLTEELQLKI NGYGRHGAAA VGVETAEEIA  180
EPLPPSPSFA YLLNVKEKSA ASTMLRLWPQ ADDDDGDVGG GGGGGSSSPP RRGLQLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-17189194MEF2 CHIMERA
6byy_B1e-17189194MEF2 CHIMERA
6byy_C1e-17189194MEF2 CHIMERA
6byy_D1e-17189194MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG359300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5524821e-35FN552482.1 Pennisetum glaucum AFLP fragment RQVTKKA2-4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811394.11e-135MADS-box transcription factor 30-like
SwissprotQ655V41e-53MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A2T7DVG81e-137A0A2T7DVG8_9POAL; Uncharacterized protein
STRINGPavir.J10823.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-33AGAMOUS-like 6