PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG363800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 319aa    MW: 33619.5 Da    PI: 5.5486
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG363800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.4e-06144542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         +C+ +e  ++   C+ +   lC+ C   +H        H +vp+
  Pavir.4KG363800.1.p  1 MCEVCELAPAAVTCKADAAVLCAACDADIHDAnplarrHARVPV 44
                         5*****************************44677777888775 PP
2CCT70.63.8e-24244287144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a
  Pavir.4KG363800.1.p 244 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRA 287
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-8144IPR000315B-box-type zinc finger
PROSITE profilePS5011910.466144IPR000315B-box-type zinc finger
CDDcd000213.27E-8144No hitNo description
PfamPF062036.8E-18244286IPR010402CCT domain
PROSITE profilePS5101716.896244286IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MCEVCELAPA AVTCKADAAV LCAACDADIH DANPLARRHA RVPVAPIGSE AAASAVEAML  60
FGTGDGDPAA PEAEEPQDAA AGHGHGQLQH HHQHALNLNV EAKDMKLDYL FSDLDPYLSV  120
DIPRFQHADS VVPSGVGAGA AAGAVELDFT CGIGVKPSSY SSYTATSFAH SGSSSEVGVV  180
PEAFCGGGAG TFELDFTRPK PQAYMPYTAT PQSHSVSSVD VEVAAAERGD MAAARPVPLV  240
GESREARLMR YREKRKNRRF EKTIRYASRK AYAETRPRIK GRFAKRADHD ADDAEAEAAV  300
PSPASYVLDF GYGVVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.6090.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG363800.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812707.11e-148zinc finger protein CONSTANS-LIKE 5-like
TrEMBLA0A3L6PCM11e-154A0A3L6PCM1_PANMI; Zinc finger protein CONSTANS-LIKE 5-like
STRINGPavir.J19402.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.15e-22CONSTANS-like 4