PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG365000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 671aa    MW: 77681.6 Da    PI: 6.4331
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG365000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.51.1e-2326118191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +fYn+YA   GFsvrk++ + +++++e t r+fvC ++ +ree+  k + k+rr+r  tr+gC akl++ +++ +g+w+v+++  eHnH+
  Pavir.4KG365000.1.p  26 QFYNAYALGKGFSVRKRYVEWNSDHTELTLRRFVCRRQIYREEKYVKkEIKKRRPRDITRVGCPAKLVIALDRnSGQWYVKNFIDEHNHP 115
                          6***************************************99987663679999*****************999**************** PP

                 FAR1  89 lap 91 
                          lap
  Pavir.4KG365000.1.p 116 LAP 118
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-2226118IPR004330FAR1 DNA binding domain
PfamPF105515.7E-23239317IPR018289MULE transposase domain
PROSITE profilePS509669.458483523IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MADLENLMEY SEIVSKIFAN EDEGYQFYNA YALGKGFSVR KRYVEWNSDH TELTLRRFVC  60
RRQIYREEKY VKKEIKKRRP RDITRVGCPA KLVIALDRNS GQWYVKNFID EHNHPLAPAD  120
LGCLLRLHRL ISDAQKAEIV ELGVAGILKH QIFEIMEIQY GGYDKVGYTS RDLYNFCHLY  180
KQKIIAASDA QTIISHLMEC QNRDSDFFFK YMTDGEGHLQ GLFWCDTKCL LDYKAFDDVV  240
VFDSTYKTNR YSLPLVPFVG VNHHYRTVIF GCGIISHENI ESYVWLLKTF TEANVQKYHI  300
SVITDGDLAM QRAISVNLVH NIHDDTGKAE FRIFMYDLCS IEEIERKWQA FFEKYDVTED  360
SWLYKMYEVR ATWCAAYHAD NRYLGLRSNQ RSESMNSRLQ MKLDGKMTLL EMVQHYESCL  420
TKVRRIEADD DTNALQSEPF TDPDASILEF CVEAAKKCSL VEILDGDDTT EYIVGRSDRY  480
MIYYVKCELT EEANLKEISC SCHKLQSLGT SCSHIFFVLG IRDESMLQDC CVLVRWTMGA  540
KRAFPPIRKS TMYDYSPTLL RYPSRSTEGY ERIKRVLEQE AAVVMPNAGA NEGNMYGLVL  600
PQVPEVDCEE FRDFLDPMHV PGRGTPLTKL KSSSDKTRAD SKCSLCKGQG HNWRTCHLRP  660
EVVFDNVHQG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG365000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A453MVG20.0A0A453MVG2_AEGTS; Uncharacterized protein
TrEMBLA0A453MVW80.0A0A453MVW8_AEGTS; Uncharacterized protein
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.Da01665.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-74FAR1-related sequence 5