PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG366200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 268aa    MW: 30866.1 Da    PI: 6.871
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG366200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.14.5e-2125113290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                          f+  Y+ + GF+vrk+  +k+k +g++   ++vC +eg+r+e+k++ + ++ +raetrt+C+ ++ +++++ +g+++vt+l leHnH l+
  Pavir.4KG366200.1.p  25 FWIIYGGQKGFEVRKRFANKRKSDGNVRFCRYVCANEGHRKEDKRD-HLTKCPRAETRTDCQVRMGLTMDQeKGTYKVTDLILEHNHMLQ 113
                          8899***************************************999.999*******************999***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1625112IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEANREGLLP QVGMEFSSVQ EAWMFWIIYG GQKGFEVRKR FANKRKSDGN VRFCRYVCAN  60
EGHRKEDKRD HLTKCPRAET RTDCQVRMGL TMDQEKGTYK VTDLILEHNH MLQLPQTLHL  120
MVSQRKISEL QGFEIETADD AGIGPKAAHE LACVQVGGSS NLSYTLRDHK NYLRAKRQRE  180
MAYDQAGSML MYFQDKIAEN PSFQYALQMD IEEQIANIFW VDAKMLTDYA YFGDVVSFDT  240
TFGTNKESRP FGVFVGFNQF REIMNTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG366200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1084210.0AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence.
GenBankAC0776930.0AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876513.11e-173protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A2T8KLJ41e-176A0A2T8KLJ4_9POAL; Uncharacterized protein
TrEMBLA0A2T8KLL21e-176A0A2T8KLL2_9POAL; Uncharacterized protein
STRINGOS10T0571900-001e-173(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-42FAR1-related sequence 5