PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG368700.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 194aa MW: 20981.2 Da PI: 8.4884

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG368700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	25.8	2.4e-08	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+vkg++++h+kSHLQ+YR+ Pavir.4KG368700.2.p 1 MGVKGVSISHIKSHLQMYRS 20 99*****************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-7	1	21	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MGVKGVSISH IKSHLQMYRS SSNSSSAHQS SLQKSTSSSN RKRVFLNRED HCAYASPDGN 60 TVASDKNIYA ALLHGCSQWS PYQIPSLQEV FRSWEQSRGR IPGNSNVLTI EKAAVKPSHT 120 ASNRRPDEKQ TGCDLTLSIG LWEDASSDAD GSSTISEELR ATAAGSRRVA TVKEEESKPA 180 LNLDLTISSS WLA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG368700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810426.1	1e-113	probable transcription factor KAN3
TrEMBL	A0A3L6S1V1	1e-113	A0A3L6S1V1_PANMI; Uncharacterized protein
STRING	Pavir.Da00200.1.p	1e-137	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.4KG368700.2.p