PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG369200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 252aa    MW: 28306.1 Da    PI: 8.433
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG369200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.81.5e-2297178190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          ++Yn+YA +vGFsvrks+sk + ++++i+++  vCs+eg+r++++++       +  trtgC+a+++ + +k+g w v+k++l+HnH la
  Pavir.4KG369200.1.p  97 EMYNTYAGKVGFSVRKSHSKLR-EDKTIYQKYIVCSNEGYRRNKSSQ-------KDITRTGCEARVQFSVSKEGIWTVQKVVLDHNHYLA 178
                          58**************998776.8888**************998766.......99*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1997178IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAGEADLDIP TTAVAMPVVG QVKQSGFQLS PMVSFVPALA NDREQTTQSP QNSSEDNTVV  60
HEAISEKAQD EVVHEIGQAL IVPEVGMAFD SEDKAWEMYN TYAGKVGFSV RKSHSKLRED  120
KTIYQKYIVC SNEGYRRNKS SQKDITRTGC EARVQFSVSK EGIWTVQKVV LDHNHYLASP  180
NKLHKLKSQR RVTEADRMLI IQIREAGTKP AQVYEFMKKF YGGVDKVPLS RMDCNNAIVR  240
ERKKYLESND A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG369200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971460.11e-107protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_012703729.11e-103protein FAR1-RELATED SEQUENCE 5-like
TrEMBLT1MNQ51e-96T1MNQ5_TRIUA; Uncharacterized protein
STRINGSb10g007195.11e-111(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1212587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-29FAR1-related sequence 5