PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG388900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 194aa    MW: 19714.7 Da    PI: 5.7081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG388900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.8e-141760855
                  AP2  8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g
  Pavir.4KG388900.1.p 17 RRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 60
                         577.7*********83...36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.2811168IPR001471AP2/ERF domain
SMARTSM003801.6E-251574IPR001471AP2/ERF domain
CDDcd000189.93E-131568No hitNo description
SuperFamilySSF541715.89E-181568IPR016177DNA-binding domain
PfamPF008471.1E-71560IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-251569IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MNAGELVLGA PPSAVPRRPS GRYAAEIRDP AKKTPIWLGT FDSAEAAARA YDAAARSLRG  60
PTARTNFPSA AAPAPRHSRP PAPSAAAQAA AAAAAATSSH SSTIESWSDG ATRAALARSA  120
ASVLARSAAP TEEDEDCRSY CGSSSSVLCE DTGGDDAAAS RAPLPFDLNL PPPHDAASET  180
DQMGARYDTL LRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-15168172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG388900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810343.13e-75ethylene-responsive transcription factor 3-like
TrEMBLA0A3L6RXB51e-74A0A3L6RXB5_PANMI; Uncharacterized protein
STRINGSb10g028110.19e-62(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-13erf domain protein 9