PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG003100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 499aa    MW: 52887.5 Da    PI: 6.2747
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG003100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS230.38.7e-711354972374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                          v+ Lle+A+  +sgd++ a+++Larl+++  + p g    p+ R+aa++  AL + l+  +++  +a+ +s+    +++ +laa+k++ +
  Pavir.4NG003100.1.p 135 VDELLEAARRADSGDTTGAREILARLNHRltSPPLGVghpPLLRAAAHLRDALLRLLVPPGPG--SAV-SSPL---DVALRLAAHKALAD 218
                          678*************************9844455524569******************4444..333.3333...4899********** PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTgvgspesgskeeleetgerLakf 168
                          +sP+++f+ +t  qa+l+a+  ++rvH++D+d++ G+ Wp+L q+La +          +pps+++T+++sp s +  el+ t e L++f
  Pavir.4NG003100.1.p 219 ASPTVQFASFTSTQALLDALGAARRVHVVDLDVGFGARWPPLVQELALQWrrafaaqlLPPPSIKLTALVSPGSAHPVELRLTDESLTRF 308
                          ***********************************************64433466555569***************************** PP

                 GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                          A+ lg++fef+++v + l+   +   +    gEa+aV+l l   ++         + +++L++vk+l+P +vv+v++ + +++ ++ ++ 
  Pavir.4NG003100.1.p 309 AADLGIRFEFDAVVFDPLDPSPPVGVSAAApGEAVAVHLPLGSGTFS--------PAPATLRVVKQLRPAIVVCVDHGCHRGDLPLPHHA 390
                          *************999999999888876666**********999997........6688******************************* PP

                 GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                          l+ ++  +a+++sl+a  ++ +++ +kvE+++l++++  ++              + Wr ++ +aGF pv+ls+ a++qa++l+r+++  
  Pavir.4NG003100.1.p 391 LNVVRSGAAFLESLDAA-GAPADAVAKVEQHILRPRVGRLLLSDRM---------APWRTMFASAGFAPVQLSSAAEAQAECLVRRTPTP 470
                          **************988.7888999**************9987655.........59********************************* PP

                 GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                          g+ v +++++l l W++  Lv+vSaWr
  Pavir.4NG003100.1.p 471 GFYVVKRQEALALRWQQSVLVTVSAWR 497
                          **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.283108477IPR005202Transcription factor GRAS
PfamPF035143.0E-68135497IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MISALPMSNL HDAGNAQDHD ASPSPPNKRL RRSPAPEPTS VLYNRSPSPP TSSSLASSSA  60
PEPPPISAED WEAVLSGDMA ARSQDSCLFL PWIMEDDDTQ ADAFLAPPPL CQEPAIDPFL  120
LPLPVAEDLQ PQAVVDELLE AARRADSGDT TGAREILARL NHRLTSPPLG VGHPPLLRAA  180
AHLRDALLRL LVPPGPGSAV SSPLDVALRL AAHKALADAS PTVQFASFTS TQALLDALGA  240
ARRVHVVDLD VGFGARWPPL VQELALQWRR AFAAQLLPPP SIKLTALVSP GSAHPVELRL  300
TDESLTRFAA DLGIRFEFDA VVFDPLDPSP PVGVSAAAPG EAVAVHLPLG SGTFSPAPAT  360
LRVVKQLRPA IVVCVDHGCH RGDLPLPHHA LNVVRSGAAF LESLDAAGAP ADAVAKVEQH  420
ILRPRVGRLL LSDRMAPWRT MFASAGFAPV QLSSAAEAQA ECLVRRTPTP GFYVVKRQEA  480
LALRWQQSVL VTVSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2121349780375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG003100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810594.10.0scarecrow-like protein 6
TrEMBLA0A2S3HMR90.0A0A2S3HMR9_9POAL; Uncharacterized protein
STRINGPavir.Db02461.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-67GRAS family protein