PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG004500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 212aa    MW: 23217.8 Da    PI: 10.1857
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG004500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.85.8e-2543145199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+kv tpsdv+k++rlv+pk+ ae+h  ++ ++++ l + d +g        W+++++++ +s++yv+tkGW+++v++++L +gD+v F 
  Pavir.4NG004500.1.p  43 FEKVVTPSDVGKLNRLVVPKHLAEKHlPLPGAGGTVLCFHDARGrgeaatTAWRFRYSFWSSSQSYVMTKGWSRYVRDKRLAAGDTVSFC 132
                          99*************************777778999****************************************************** PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                             r++++l++  +r+
  Pavir.4NG004500.1.p 133 ---RDGARLFIDCRRR 145
                          ...4667788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-3135146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-2538140IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-2441136No hitNo description
SMARTSM010193.4E-1443146IPR003340B3 DNA binding domain
PfamPF023623.1E-2243145IPR003340B3 DNA binding domain
PROSITE profilePS5086311.74443146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MALAHALESG SSSRPSDDAG GLPAAAGQGL HSGGSCRPRD RMFEKVVTPS DVGKLNRLVV  60
PKHLAEKHLP LPGAGGTVLC FHDARGRGEA ATTAWRFRYS FWSSSQSYVM TKGWSRYVRD  120
KRLAAGDTVS FCRDGARLFI DCRRRRAPVV PVPVPLVPPQ QQVQQRLVVA PPRVVSMKEE  180
QEEAPRGRCL RLFGVNLELE LEPLLLLDLQ L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-38391454113B3 domain-containing transcription factor NGA1
5os9_B8e-38391454113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG004500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681403.12e-65B3 domain-containing protein Os06g0107800
SwissprotQ5VS556e-53Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A1E5VK672e-65A0A1E5VK67_9POAL; B3 domain-containing protein
TrEMBLA0A3L6RX052e-65A0A3L6RX05_PANMI; Uncharacterized protein
STRINGPavir.Db02478.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-37related to ABI3/VP1 1