PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG007200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 464aa    MW: 51262.8 Da    PI: 8.6083
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG007200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox201.2e-063543921954
                          HHH..SSS--HHHHHHHHHHCTS-HH.HHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLter.qVkvWFqNrRak 54 
                          Fe   ++yp+  ++  LA+++gL+ + qV++WF N R +
  Pavir.4NG007200.1.p 354 FEHflHPYPNDVDKHILARQTGLSRSqQVSNWFINARVR 392
                          554459*****************97528*********88 PP
2BELL74.81.4e-242272821772
                 BELL  17 eeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          ++Vd+rY+ y+eq+++v   Feavag g++++Yt+lAl+a+SrhFrcL+da++ q+
  Pavir.4NG007200.1.p 227 HQVDRRYRVYREQMRAVEVWFEAVAGAGASQVYTRLALRAMSRHFRCLRDALVAQV 282
                          79***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-37116280IPR006563POX domain
PfamPF075262.5E-38122278IPR006563POX domain
PROSITE profilePS500719.297332396IPR001356Homeobox domain
CDDcd000861.05E-9335397No hitNo description
SMARTSM003891.7E-5335400IPR001356Homeobox domain
SuperFamilySSF466893.72E-14336403IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-25338402IPR009057Homeodomain-like
PfamPF059206.4E-16352392IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAVHHHPHLL DLSPPPSTVA MEAPPPSFDH GQLLALHVDG TDDMLSLGGL PATDHHVLAD  60
DTSAWPQGAI SLSLYNYDGT AGGSSSLLMS HQDQLAAVPP AAVSLQAPNN HLPPPSMQPF  120
QLRSSKYLGP AQDLLTEFCS LQGDSHAMNG VNKRAPGKWE DMEPSSSSSG LWGHPSLSSM  180
DLLELERRKS RLLSMVEEVG SCVHAVRFFT FDHGNLATTF HRSINKHQVD RRYRVYREQM  240
RAVEVWFEAV AGAGASQVYT RLALRAMSRH FRCLRDALVA QVRALMRKQQ NDYGGPPAPA  300
AGATKGDTPR LKVLDQCLRR QRAFQHPGSI DNYPWRPQRG LPERAVAVLR AWLFEHFLHP  360
YPNDVDKHIL ARQTGLSRSQ QVSNWFINAR VRLWKPMIED MYRDEVQQQQ QSEAATTQNN  420
PTSAGADAAA AGGVAVKAEQ NATMIPASST VTYGWRRRPS VHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-13341403566Homeobox protein Meis2
3k2a_B1e-13341403566Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG007200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9545521e-151EU954552.1 Zea mays clone 1470067 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813822.10.0homeobox protein BEL1 homolog
SwissprotQ388978e-81BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A2T7E3W00.0A0A2T7E3W0_9POAL; Uncharacterized protein
STRINGPavir.Db02458.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.14e-69TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]