PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG007200.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 433aa    MW: 47724.9 Da    PI: 8.17
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG007200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.1e-093243611954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  Pavir.4NG007200.4.p 324 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 361
                          554459******************************88 PP
2BELL97.21.4e-31184252472
                 BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          el+++k++Lls++eeVd+rY+ y+eq+++v   Feavag g++++Yt+lAl+a+SrhFrcL+da++ q+
  Pavir.4NG007200.4.p 184 ELERRKSRLLSMVEEVDRRYRVYREQMRAVEVWFEAVAGAGASQVYTRLALRAMSRHFRCLRDALVAQV 252
                          899***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-50116250IPR006563POX domain
PfamPF075261.3E-41122248IPR006563POX domain
PROSITE profilePS5007111.71302365IPR001356Homeobox domain
SMARTSM003896.5E-9305369IPR001356Homeobox domain
CDDcd000862.29E-11305366No hitNo description
SuperFamilySSF466895.56E-17306372IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-27308371IPR009057Homeodomain-like
PfamPF059201.9E-17322361IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAVHHHPHLL DLSPPPSTVA MEAPPPSFDH GQLLALHVDG TDDMLSLGGL PATDHHVLAD  60
DTSAWPQGAI SLSLYNYDGT AGGSSSLLMS HQDQLAAVPP AAVSLQAPNN HLPPPSMQPF  120
QLRSSKYLGP AQDLLTEFCS LQGDSHAMNG VNKRAPGKWE DMEPSSSSSG LWGHPSLSSM  180
DLLELERRKS RLLSMVEEVD RRYRVYREQM RAVEVWFEAV AGAGASQVYT RLALRAMSRH  240
FRCLRDALVA QVRALMRKQQ NDYGGPPAPA AGATKGDTPR LKVLDQCLRR QRAFQHPGSI  300
DNYPWRPQRG LPERAVAVLR AWLFEHFLHP YPNDVDKHIL ARQTGLSRSQ VSNWFINARV  360
RLWKPMIEDM YRDEVQQQQQ SEAATTQNNP TSAGADAAAA GGVAVKAEQN ATMIPASSTV  420
TYGWRRRPSV HQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15311372566Homeobox protein Meis2
3k2a_B3e-15311372566Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG007200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399090.0BT039909.1 Zea mays full-length cDNA clone ZM_BFc0050K05 mRNA, complete cds.
GenBankKJ7282860.0KJ728286.1 Zea mays clone pUT6565 HB transcription factor (HB38) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813822.10.0homeobox protein BEL1 homolog
SwissprotQ388975e-89BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A2T7E3W00.0A0A2T7E3W0_9POAL; Uncharacterized protein
STRINGPavir.Db02458.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.35e-67BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]