PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG018000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 215aa    MW: 22976.3 Da    PI: 12.0886
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG018000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.46.5e-1151132295
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                            GfrF Ptde lvv+yL++++ +++l++       d+ ++  P +       +eke yfF+++++ky +g  ++  t +g+ + tgk+k
  Pavir.4NG018000.1.p  51 LSGFRFWPTDEVLVVHYLRRRTLASPLPA------HDLSDLlPPGEW------SEKERYFFTCKETKYVKGGART-GTGTGRPRGTGKEK 127
                          68************************888......344444145555......5789***********9976544.47899********* PP

                  NAM  91 evlsk 95 
                          +v ++
  Pavir.4NG018000.1.p 128 PVAVA 132
                          99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-1343131IPR003441NAC domain
PfamPF023651.4E-752124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAGHLLLRLA SPASPGTPHR RHLLRLAADP LPPHRRSHRP RELAMAKPRL LSGFRFWPTD  60
EVLVVHYLRR RTLASPLPAH DLSDLLPPGE WSEKERYFFT CKETKYVKGG ARTGTGTGRP  120
RGTGKEKPVA VAVPARGGGQ AQAQRGHAGV HRLRTRGRGR GGAARAAAGA ATARVVAGGV  180
VEPPDGHVAR AARAGAGVAD EWAPPYLTEI ANRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG018000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809222.11e-38NAC domain-containing protein 83
TrEMBLA0A3L6T0H62e-38A0A3L6T0H6_PANMI; NAC domain-containing protein 83
STRINGPavir.Cb00769.1.p5e-37(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-11NAC domain containing protein 83