PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG041000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 183aa MW: 19932.4 Da PI: 4.3153

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG041000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.8	2.5e-10	96	136	43	85
S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ++sW v++ ++ + l+ GW +Fv an+L+ gD +vF+l+ Pavir.4NG041000.1.p 96 NQSWAVTY--CGELKCKKLGPGWGDFVVANRLRIGDACVFELI 136 589***..55544456*********************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.9E-10	69	137	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.8E-11	71	159	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.88E-11	72	159	No hit	No description
PROSITE profile	PS50863	9.601	96	161	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-7	96	137	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MTPSPQLENP SPHAEKTPWP QAETPSPQEE IPSPQEEMIP TPQEETIPSP QEETTPWPQA 60 EIPWPQAETT WRLEIPSRLH SHLPGSRIPA VLLFGNQSWA VTYCGELKCK KLGPGWGDFV 120 VANRLRIGDA CVFELITPAA GGTGSEGDGK VVFRVQVLRG DLPEEITSRG ATSQDPIVIV 180 DN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG041000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811196.1	1e-50	B3 domain-containing protein Os06g0112300-like isoform X1
TrEMBL	A0A3L6RQW6	2e-53	A0A3L6RQW6_PANMI; B3 domain-containing protein
STRING	Pavir.Db02193.1.p	2e-73	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Link Out ? help Back to Top
Phytozome	Pavir.4NG041000.1.p