PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG043500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 376aa    MW: 40113.5 Da    PI: 4.7677
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG043500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.22.9e-07447542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          C+ ++  e++  C  ++  lC  C +e H        H++vpl
  Pavir.4NG043500.1.p  4 QCNACGAAEARVLCCADEAALCGACDEEVHAAnklagkHQRVPL 47
                         7******99*********************66899999999986 PP
2zf-B_box29.31.8e-096294335
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                          +kC+ ++e    +fC +++ llC+dC +++H 
  Pavir.4NG043500.1.p 62 VPKCDICQEASGYFFCLEDRALLCRDCDVAIHT 94
                         589****************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.509147IPR000315B-box-type zinc finger
CDDcd000211.03E-8347No hitNo description
PfamPF006431.4E-5447IPR000315B-box-type zinc finger
SMARTSM003361.3E-9447IPR000315B-box-type zinc finger
SMARTSM003366.2E-1660107IPR000315B-box-type zinc finger
PfamPF006433.7E-76394IPR000315B-box-type zinc finger
CDDcd000211.30E-963107No hitNo description
PROSITE profilePS501198.74565107IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MKIQCNACGA AEARVLCCAD EAALCGACDE EVHAANKLAG KHQRVPLLSD AGAAAAAAAP  60
AVPKCDICQE ASGYFFCLED RALLCRDCDV AIHTVNSFVS VHQRFLLTGV QVGLDPADPV  120
PPIAENRVND AGGSVYQPAK HLPRRNPTVQ FSGEGTASVP SKNLINGDYS RQNSVPTVRT  180
GVVDWTMHNA AIQSVESPTK YMSEESPTLL QSSQTTAAFS NQINSNSDRA YNLPFSGGNG  240
SDSLPDWPVD EFFTNSEYGT NFSFSEHGTS KSDNAKLGSA GGSPQCRLAE GFVAEELLGQ  300
VPGLVTDEYM SRVPENSWAV PEVPSPPTAS GLNWHGNLHF AAYDSTMFVP EISSLQSSQD  360
QFAVPSGFKR QRRQY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.5510.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG043500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811997.10.0B-box zinc finger protein 22-like
TrEMBLA0A2S3HM190.0A0A2S3HM19_9POAL; Uncharacterized protein
STRINGPavir.J07875.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-70light-regulated zinc finger protein 1